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Name Organization Description Links
1000 Functional Connectomes Project On behalf of the ?1000 Functional Connectomes? Project we are pleased to announce the unrestricted public release of 1200 ?resting...
3D Interactive Chemical Shift Imaging 3D Interactive Chemical Shift Imaging 3DiCSI is a user-friendly and comprehensive software program for multi-dimensional CSI data visualization spectral processing...
3D RNA Modeling & Simulation Workshop, UIC Chicago, March 2010 Stanford University The structure and dynamics of molecules is central to understanding biological function, and yet most experimentalists find existing structural modeling...
3D RNA Modeling and Simulation Workshop, June 19, 2009 Stanford University The structure and dynamics of molecules is central to understanding biological function, and yet most experimentalists find existing structural modeling...
3D Slicer An extensible cross-platform totally open research platform for image computing.
3DSlicerLupusLesionModule The purpose of this Slicer3 module is to provide a capability for performing white matter lesion classification and summary.
A Coarse-Grained Physical Model for RNA University of Texas at Austin This project aims to develop a coarse-grained (CG) model for RNA at the functional group, residue as well as secondary...
A Python implementation of the multistate Bennett acceptance ratio (MBAR) University of California, Berkeley A Python implementation of the multistate Bennett acceptance ratio (MBAR) method for estimation of expectations and free energy differences (and...
A Visualization Tool for OpenSim EPFL This project is a visualization tool for OpenSim. It allows the visualization of musculoskeletal data or simulation results within the...
ABC Atlas Based Classification ABC Atlas Based Classification is a full segmentation pipeline developed and used at University of North Carolina and University...
ABI 377 Sequencer Analysis Utilities University of Texas Southwestern Medical Center at Dallas "Macintosh C programs for making gel-specific matrices, merging 2 partially run gel files, or cutting a single gel image...
ABSORB for groupwise registration This software package implements ABSORB Atlas Building by Self-Organized Registration and Bundling ? an algorithm for effective groupwise registration which...
ACTSI Request Submission Tool Emory University (partnering with Morehouse School of Medicine and Georgia Institute of Technology) A web-based tool for allowing individual such as researchers, community physicians, community advocate submitting their requests to the ACTSI.
Adaptively Sampled Particle Fluids Stanford University This project presents geometric feature-size based adaptive sampling algorithms for Lagrangian particle fluids. This adaptive sampling strategy allows using smaller...
Addama Institute for Systems Biology "Data management - An adaptable data management system designed to support the mining and analysis of biological experiment data that...
Adhesome Mount Sinai School of Medicine, Ma'ayan Laboratory Literature-based protein-protein interaction network extracted from publications describing functional interaction in adhesion complexes of mammalian cells.
Adun: high performance productivity molecular simulations code Jordi Villà Objectives Adun is a new extendible molecular simulation program that also includes data management and analysis capabilities. What follows...
Advanced Imaging Core Institute for Genomics and Systems Biology The Center?s Advanced Imaging Core (AIC) is currently employing a confocal imaging system coupled to a microfluidics platform to measure...
Advanced Normalization Tools Advanced Normalization Tools ANTS Image registration with variable transformation models elastic diffeomorphic unbiased and similarity metrics landmarks cross-correlation mutual...
Aerobiology Core Duke University The Aerobiology Core is an available resource at Duke University.
Affymetrix Power Tool Albert Einstein College of Medicine (partnering with Montefiore Medical Center) Affymetrix Power Tools (APT) is a set of cross-platform command line programs that implement algorithms for analyzing and working with...
AFNI AFNI is a set of C programs for processing analyzing and displaying FMRI data. It runs on UnixX11Motif systems including...
AIDS Specimen Bank University of California, San Francisco University of California, San Francisco offers Tissue Organ Facility resources.
Allen Brain Atlas API API and demo application for the ABA Mouse Brain data. Data available via the API includes download high resolution...
Allosteric Transitions of Supramolecular Systems Explored by Network Models University of Pittsburgh Most proteins are biomolecular machines. They perform their function by undergoing changes between different structures. Understanding the mechanism...